J3_9RUC_006

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|C|1546
9RUC|1|L5|A|1547
9RUC|1|L5|G|1548
*
9RUC|1|L5|C|1580
9RUC|1|L5|G|1581
9RUC|1|L5|PSU|1582
9RUC|1|L5|A|1583
9RUC|1|L5|G|1584
*
9RUC|1|L5|U|1609
9RUC|1|L5|C|1610
9RUC|1|L5|C|1611
9RUC|1|L5|G|1612

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a