J3_9RUC_009

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9RUC|1|L5|U|2788, 9RUC|1|L5|A|2789, 9RUC|1|L5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|G|2402
9RUC|1|L5|A|2403
9RUC|1|L5|A|2404
9RUC|1|L5|G|2405
*
9RUC|1|L5|C|2785
9RUC|1|L5|C|2786
9RUC|1|L5|A|2787
9RUC|1|L5|U|2788
9RUC|1|L5|A|2789
9RUC|1|L5|U|2790
9RUC|1|L5|C|2791
*
9RUC|1|L5|G|2800
9RUC|1|L5|U|2801
9RUC|1|L5|C|2802

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

60S ribosomal protein L39