J3_9RUC_013

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9RUC|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|C|3937
9RUC|1|L5|G|3938
9RUC|1|L5|G|3939
*
9RUC|1|L5|C|4074
9RUC|1|L5|U|4075
9RUC|1|L5|G|4076
9RUC|1|L5|A|4077
9RUC|1|L5|C|4078
*
9RUC|1|L5|G|4168
9RUC|1|L5|G|4169
9RUC|1|L5|A|4170
9RUC|1|L5|C|4171
9RUC|1|L5|A|4172
9RUC|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain Li

60S ribosomal protein L36