J3_9RUC_017

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9RUC|1|L5|U|4882, 9RUC|1|L5|A|4938, 9RUC|1|L5|C|4940, 9RUC|1|L5|A|4943, 9RUC|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|G|4751
9RUC|1|L5|U|4752
9RUC|1|L5|U|4753
9RUC|1|L5|G|4754
*
9RUC|1|L5|C|4879
9RUC|1|L5|C|4880
9RUC|1|L5|U|4881
9RUC|1|L5|U|4882
9RUC|1|L5|C|4883
*
9RUC|1|L5|G|4936
9RUC|1|L5|C|4937
9RUC|1|L5|A|4938
9RUC|1|L5|C|4939
9RUC|1|L5|C|4940
9RUC|1|L5|G|4941
9RUC|1|L5|C|4942
9RUC|1|L5|A|4943
9RUC|1|L5|C|4944
9RUC|1|L5|G|4945
9RUC|1|L5|U|4946
9RUC|1|L5|U|4947
9RUC|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

Large ribosomal subunit protein eL33