J3_9RUC_023
3D structure
- PDB id
- 9RUC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9RUC|1|S2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RUC_023 not in the Motif Atlas
- Homologous match to J3_9PN5_031
- Geometric discrepancy: 0.1337
- The information below is about J3_9PN5_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.8
- Basepair signature
- cWW-F-cWW-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9RUC|1|S2|U|682
9RUC|1|S2|G|683
9RUC|1|S2|G|684
*
9RUC|1|S2|U|918
9RUC|1|S2|A|919
9RUC|1|S2|A|920
9RUC|1|S2|G|921
9RUC|1|S2|A|922
9RUC|1|S2|G|923
*
9RUC|1|S2|C|1019
9RUC|1|S2|A|1020
9RUC|1|S2|U|1021
9RUC|1|S2|U|1022
9RUC|1|S2|A|1023
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- 40S ribosomal protein S27
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