J3_9RVC_002

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

9RVC|1|A|C|49, 9RVC|1|A|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RVC_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1232

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9RVC|1|A|G|47
9RVC|1|A|C|48
9RVC|1|A|C|49
9RVC|1|A|U|50
9RVC|1|A|A|51
9RVC|1|A|A|52
9RVC|1|A|U|53
*
9RVC|1|A|A|367
9RVC|1|A|G|368
9RVC|1|A|G|369
9RVC|1|A|G|370
9RVC|1|A|A|371
9RVC|1|A|A|372
9RVC|1|A|U|373
9RVC|1|A|C|374
9RVC|1|A|U|375
*
9RVC|1|A|A|401
9RVC|1|A|G|402
9RVC|1|A|C|403

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16