J3_9RVC_009
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9RVC|1|A|A|985, 9RVC|1|A|G|986, 9RVC|1|A|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0744
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9RVC|1|A|U|965
9RVC|1|A|U|966
9RVC|1|A|U|967
9RVC|1|A|A|968
9RVC|1|A|A|969
9RVC|1|A|U|970
9RVC|1|A|U|971
9RVC|1|A|C|972
*
9RVC|1|A|G|983
9RVC|1|A|A|984
9RVC|1|A|A|985
9RVC|1|A|G|986
9RVC|1|A|A|987
9RVC|1|A|A|988
9RVC|1|A|C|989
9RVC|1|A|C|990
9RVC|1|A|U|991
9RVC|1|A|U|992
9RVC|1|A|A|993
9RVC|1|A|C|994
*
9RVC|1|A|G|1232
9RVC|1|A|G|1233
9RVC|1|A|C|1234
9RVC|1|A|U|1235
9RVC|1|A|A|1236
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14B
- Chain S
- Small ribosomal subunit protein uS19
- Chain Y
- Transfer RNA; tRNA
- Chain j
- Small ribosomal subunit protein uS10
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