J3_9RVC_019
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9RVC|1|a|U|494, 9RVC|1|a|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_019 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3729
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9RVC|1|a|C|32
9RVC|1|a|U|33
9RVC|1|a|U|34
9RVC|1|a|G|35
*
9RVC|1|a|C|491
9RVC|1|a|G|492
9RVC|1|a|A|493
9RVC|1|a|U|494
9RVC|1|a|A|495
9RVC|1|a|G|496
9RVC|1|a|U|497
9RVC|1|a|G|498
9RVC|1|a|A|499
9RVC|1|a|A|500
9RVC|1|a|C|501
9RVC|1|a|C|502
9RVC|1|a|A|503
9RVC|1|a|G|504
9RVC|1|a|U|505
9RVC|1|a|A|506
9RVC|1|a|C|507
*
9RVC|1|a|G|514
9RVC|1|a|G|515
9RVC|1|a|A|516
9RVC|1|a|A|517
9RVC|1|a|A|518
9RVC|1|a|G|519
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain e
- Large ribosomal subunit protein uL4
- Chain p
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL23
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