J3_9RVC_023
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9RVC|1|a|U|731, 9RVC|1|a|G|837, 9RVC|1|a|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_023 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.2311
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9RVC|1|a|U|728
9RVC|1|a|G|729
9RVC|1|a|A|730
9RVC|1|a|U|731
9RVC|1|a|C|732
9RVC|1|a|U|733
9RVC|1|a|A|734
*
9RVC|1|a|U|818
9RVC|1|a|A|819
9RVC|1|a|G|820
*
9RVC|1|a|C|836
9RVC|1|a|G|837
9RVC|1|a|A|838
9RVC|1|a|A|839
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: