J3_9RVC_029
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUG*CUAACC*GAGACAG
- Length
- 16 nucleotides
- Bulged bases
- 9RVC|1|a|A|2225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_029 not in the Motif Atlas
- Geometric match to J3_4WF9_007
- Geometric discrepancy: 0.2047
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9RVC|1|a|U|2118
9RVC|1|a|U|2119
9RVC|1|a|G|2120
*
9RVC|1|a|C|2223
9RVC|1|a|U|2224
9RVC|1|a|A|2225
9RVC|1|a|A|2226
9RVC|1|a|C|2227
9RVC|1|a|C|2228
*
9RVC|1|a|G|2249
9RVC|1|a|A|2250
9RVC|1|a|G|2251
9RVC|1|a|A|2252
9RVC|1|a|C|2253
9RVC|1|a|A|2254
9RVC|1|a|G|2255
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: