J3_9RVC_030
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9RVC|1|a|A|2415, 9RVC|1|a|U|2417, 9RVC|1|a|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_030 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1618
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9RVC|1|a|G|2309
9RVC|1|a|C|2310
9RVC|1|a|U|2311
*
9RVC|1|a|A|2411
9RVC|1|a|C|2412
9RVC|1|a|U|2413
9RVC|1|a|U|2414
9RVC|1|a|A|2415
9RVC|1|a|G|2416
9RVC|1|a|U|2417
9RVC|1|a|G|2418
9RVC|1|a|A|2419
9RVC|1|a|U|2420
9RVC|1|a|C|2421
9RVC|1|a|C|2422
*
9RVC|1|a|G|2448
9RVC|1|a|C|2449
9RVC|1|a|U|2450
9RVC|1|a|C|2451
9RVC|1|a|A|2452
9RVC|1|a|A|2453
9RVC|1|a|C|2454
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33B
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: