J3_9RVC_033
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CA*UAUAAG*CGAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_033 not in the Motif Atlas
- Geometric match to J3_9DFE_018
- Geometric discrepancy: 0.3605
- The information below is about J3_9DFE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24127.1
- Basepair signature
- cWW-F-cWW-tWH-F-F-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9RVC|1|a|C|2816
9RVC|1|a|A|2817
*
9RVC|1|a|U|2826
9RVC|1|a|A|2827
9RVC|1|a|U|2828
9RVC|1|a|A|2829
9RVC|1|a|A|2830
9RVC|1|a|G|2831
*
9RVC|1|a|C|2909
9RVC|1|a|G|2910
9RVC|1|a|A|2911
9RVC|1|a|A|2912
9RVC|1|a|G|2913
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
Coloring options: