J3_9S1D_001

3D structure

PDB id

9S1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the methyltransferase ribozyme 1 with two 2'O-methylation (MTR1m2)

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(1MA)G*CUGA(OMC)C*GACA(OMU)AC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA, OMC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9S1D_001 not in the Motif Atlas

Geometric match to J3_8ZAU_001

Geometric discrepancy: 0.1134

The information below is about J3_8ZAU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98379.3

Basepair signature

cWW-F-F-F-cWW-cWS-F-cWW-cSW-F-F-F

Number of instances in this motif group

3

Unit IDs

9S1D|1|A|G|6
9S1D|1|A|1MA|7
9S1D|1|A|G|8
*
9S1D|1|B|C|8
9S1D|1|B|U|9
9S1D|1|B|G|10
9S1D|1|B|A|11
9S1D|1|B|OMC|12
9S1D|1|B|C|13
*
9S1D|1|C|G|38
9S1D|1|C|A|39
9S1D|1|C|C|40
9S1D|1|C|A|41
9S1D|1|C|OMU|42
9S1D|1|C|A|43
9S1D|1|C|C|44

Current chains

Chain A

Chains: A

Chain B

Chains: B

Chain C

Chains: C

Nearby chains