Motif J3_98379.3 Version J3_98379.3 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 1-16 | 4-12 | 6-7 | 6-10 | 13-14 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7Q80_002 | 7Q80 | 0.1471 | 0 | E+F+D | RNA 2 + RNA 3 | C | 8 | U | 9 | G | 10 | A | 11 | C | 12 | C | 13 | * | G | 38 | A | 39 | C | 40 | A | 41 | U | 42 | A | 43 | C | 44 | * | G | 6 | 1MA | 7 | G | 8 | cWW | cWS | cWW | ncSW | cWW |
| 2 | J3_8ZAU_001 | 8ZAU | 0.0000 | 0 | A | RNA (69-MER) | C | 6 | U | 7 | G | 8 | A | 9 | C | 10 | C | 11 | * | G | 41 | A | 42 | C | 43 | A | 44 | U | 45 | A | 46 | C | 47 | * | G | 62 | 1MA | 63 | G | 64 | cWW | cWS | cWW | cSW | cWW |
| 3 | J3_7Q80_001 | 7Q80 | 0.0982 | 0 | B+C+A | RNA 2 + RNA 3 | C | 8 | U | 9 | G | 10 | A | 11 | C | 12 | C | 13 | * | G | 38 | A | 39 | C | 40 | A | 41 | U | 42 | A | 43 | C | 44 | * | G | 6 | 1MA | 7 | G | 8 | cWW | cWS | cWW | ncSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| G(1MA)G*CUGACC*GACAUAC | 2 |
| CUGACC*GACAUAC*G(1MA)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (1MA)*UGAC*ACAUA | 2 |
| UGAC*ACAUA*(1MA) | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-cWW-cWS-F-cWW-cSW-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.09 | Max 0.16
Coloring options: