J3_9S3C_003
3D structure
- PDB id
- 9S3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9S3C|1|L5|U|354, 9S3C|1|L5|A|362, 9S3C|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9S3C_003 not in the Motif Atlas
- Homologous match to J3_8GLP_024
- Geometric discrepancy: 0.0287
- The information below is about J3_8GLP_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.4
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
9S3C|1|L5|C|351
9S3C|1|L5|G|352
9S3C|1|L5|A|353
9S3C|1|L5|U|354
9S3C|1|L5|A|355
9S3C|1|L5|G|356
9S3C|1|L5|U|357
9S3C|1|L5|C|358
9S3C|1|L5|A|359
9S3C|1|L5|A|360
9S3C|1|L5|C|361
9S3C|1|L5|A|362
9S3C|1|L5|A|363
9S3C|1|L5|G|364
9S3C|1|L5|U|365
9S3C|1|L5|A|366
9S3C|1|L5|C|367
*
9S3C|1|L5|G|374
9S3C|1|L5|G|375
9S3C|1|L5|A|376
9S3C|1|L5|A|377
9S3C|1|L5|A|378
9S3C|1|L5|G|379
*
9S3C|1|L8|C|21
9S3C|1|L8|U|22
9S3C|1|L8|C|23
9S3C|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain CZ
- nascent chain
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- 60S ribosomal protein L39
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