J3_9S3D_023

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9S3D|1|L5|U|4882, 9S3D|1|L5|A|4938, 9S3D|1|L5|C|4940, 9S3D|1|L5|A|4943, 9S3D|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3D|1|L5|G|4751
9S3D|1|L5|U|4752
9S3D|1|L5|U|4753
9S3D|1|L5|G|4754
*
9S3D|1|L5|C|4879
9S3D|1|L5|C|4880
9S3D|1|L5|U|4881
9S3D|1|L5|U|4882
9S3D|1|L5|C|4883
*
9S3D|1|L5|G|4936
9S3D|1|L5|C|4937
9S3D|1|L5|A|4938
9S3D|1|L5|C|4939
9S3D|1|L5|C|4940
9S3D|1|L5|G|4941
9S3D|1|L5|C|4942
9S3D|1|L5|A|4943
9S3D|1|L5|C|4944
9S3D|1|L5|G|4945
9S3D|1|L5|U|4946
9S3D|1|L5|U|4947
9S3D|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a