J3_9S7D_014

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9S7D_014 not in the Motif Atlas

Homologous match to J3_8B0X_006

Geometric discrepancy: 0.1045

The information below is about J3_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9S7D|1|AA|A|551
9S7D|1|AA|G|552
9S7D|1|AA|G|553
9S7D|1|AA|A|554
*
9S7D|1|AA|U|717
9S7D|1|AA|A|718
9S7D|1|AA|C|719
*
9S7D|1|AA|G|774
9S7D|1|AA|G|775
9S7D|1|AA|A|776
9S7D|1|AA|U|777

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7m

Chain AG

Small ribosomal subunit protein uS9m

Chain Ax

Transfer RNA; tRNA