J3_9SLG_023

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SLG_023 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1509

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9SLG|1|a|C|700
9SLG|1|a|A|701
9SLG|1|a|G|702
*
9SLG|1|a|C|734
9SLG|1|a|G|735
9SLG|1|a|A|736
9SLG|1|a|A|737
9SLG|1|a|C|738
*
9SLG|1|a|G|762
9SLG|1|a|A|763
9SLG|1|a|U|764
9SLG|1|a|G|765

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2