J3_9SLG_025

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9SLG|1|a|A|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SLG_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2163

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9SLG|1|a|C|1300
9SLG|1|a|G|1301
9SLG|1|a|G|1302
9SLG|1|a|A|1303
9SLG|1|a|A|1304
9SLG|1|a|G|1305
*
9SLG|1|a|C|1627
9SLG|1|a|A|1628
9SLG|1|a|G|1629
*
9SLG|1|a|C|1641
9SLG|1|a|A|1642
9SLG|1|a|A|1643
9SLG|1|a|G|1644

Current chains

Chain a

23S ribosomal RNA

Nearby chains