J3_9SLG_028

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SLG_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1099

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9SLG|1|a|G|1426
9SLG|1|a|G|1427
9SLG|1|a|G|1428
9SLG|1|a|A|1429
9SLG|1|a|C|1430
9SLG|1|a|G|1431
*
9SLG|1|a|C|1566
9SLG|1|a|C|1567
*
9SLG|1|a|G|1570
9SLG|1|a|A|1571
9SLG|1|a|A|1572
9SLG|1|a|A|1573
9SLG|1|a|A|1574
9SLG|1|a|G|1575
9SLG|1|a|C|1576

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2