J3_9SLG_030
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9SLG|1|a|A|2392, 9SLG|1|a|U|2394, 9SLG|1|a|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SLG_030 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1812
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9SLG|1|a|G|2286
9SLG|1|a|C|2287
9SLG|1|a|A|2288
*
9SLG|1|a|U|2388
9SLG|1|a|C|2389
9SLG|1|a|A|2390
9SLG|1|a|U|2391
9SLG|1|a|A|2392
9SLG|1|a|G|2393
9SLG|1|a|U|2394
9SLG|1|a|G|2395
9SLG|1|a|A|2396
9SLG|1|a|U|2397
9SLG|1|a|C|2398
9SLG|1|a|C|2399
*
9SLG|1|a|G|2425
9SLG|1|a|C|2426
9SLG|1|a|U|2427
9SLG|1|a|C|2428
9SLG|1|a|A|2429
9SLG|1|a|A|2430
9SLG|1|a|C|2431
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
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