J3_9SPF_015

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9SPF|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|A|2551
9SPF|1|L5|G|2552
9SPF|1|L5|A|2553
9SPF|1|L5|U|2554
9SPF|1|L5|G|2555
*
9SPF|1|L5|C|2572
9SPF|1|L5|A|2573
9SPF|1|L5|G|2574
9SPF|1|L5|U|2575
*
9SPF|1|L5|A|2757
9SPF|1|L5|G|2758
9SPF|1|L5|G|2759
9SPF|1|L5|G|2760
9SPF|1|L5|U|2761
9SPF|1|L5|G|2762
9SPF|1|L5|U|2763
9SPF|1|L5|A|2764
9SPF|1|L5|A|2765
9SPF|1|L5|A|2766
9SPF|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27