J3_9SPF_018

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9SPF|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|3937
9SPF|1|L5|G|3938
9SPF|1|L5|G|3939
*
9SPF|1|L5|C|4074
9SPF|1|L5|U|4075
9SPF|1|L5|G|4076
9SPF|1|L5|A|4077
9SPF|1|L5|C|4078
*
9SPF|1|L5|G|4168
9SPF|1|L5|G|4169
9SPF|1|L5|A|4170
9SPF|1|L5|C|4171
9SPF|1|L5|A|4172
9SPF|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain Li

60S ribosomal protein L36