J3_9SPF_023

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9SPF|1|L5|U|4882, 9SPF|1|L5|A|4938, 9SPF|1|L5|C|4940, 9SPF|1|L5|A|4943, 9SPF|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|G|4751
9SPF|1|L5|U|4752
9SPF|1|L5|U|4753
9SPF|1|L5|G|4754
*
9SPF|1|L5|C|4879
9SPF|1|L5|C|4880
9SPF|1|L5|U|4881
9SPF|1|L5|U|4882
9SPF|1|L5|C|4883
*
9SPF|1|L5|G|4936
9SPF|1|L5|C|4937
9SPF|1|L5|A|4938
9SPF|1|L5|C|4939
9SPF|1|L5|C|4940
9SPF|1|L5|G|4941
9SPF|1|L5|C|4942
9SPF|1|L5|A|4943
9SPF|1|L5|C|4944
9SPF|1|L5|G|4945
9SPF|1|L5|U|4946
9SPF|1|L5|U|4947
9SPF|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a