J3_9SPF_033
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|S2|C|1218
9SPF|1|S2|C|1219
9SPF|1|S2|A|1220
9SPF|1|S2|G|1221
*
9SPF|1|S2|C|1645
9SPF|1|S2|C|1646
9SPF|1|S2|A|1647
9SPF|1|S2|G|1648
9SPF|1|S2|U|1649
9SPF|1|S2|A|1650
9SPF|1|S2|A|1651
*
9SPF|1|S2|U|1673
9SPF|1|S2|G|1674
9SPF|1|S2|A|1675
9SPF|1|S2|U|1676
9SPF|1|S2|U|1677
9SPF|1|S2|A2M|1678
9SPF|1|S2|A|1679
9SPF|1|S2|G|1680
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain Sc
- 40S ribosomal protein S28
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