J3_9SPI_014

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|A|2598
9SPI|1|L5|G|2599
9SPI|1|L5|A|2600
9SPI|1|L5|A|2601
9SPI|1|L5|G|2602
*
9SPI|1|L5|C|2737
9SPI|1|L5|C|2738
*
9SPI|1|L5|G|2742
9SPI|1|L5|A|2743
9SPI|1|L5|A|2744
9SPI|1|L5|A|2745
9SPI|1|L5|A|2746
9SPI|1|L5|U|2747

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a