J3_9SPI_029

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCG*(PSU)UCCG*CAAAG

Length

13 nucleotides

Bulged bases

9SPI|1|S2|C|1138, 9SPI|1|S2|A|1150

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|S2|C|1094
9SPI|1|S2|C|1095
9SPI|1|S2|G|1096
*
9SPI|1|S2|PSU|1136
9SPI|1|S2|U|1137
9SPI|1|S2|C|1138
9SPI|1|S2|C|1139
9SPI|1|S2|G|1140
*
9SPI|1|S2|C|1147
9SPI|1|S2|A|1148
9SPI|1|S2|A|1149
9SPI|1|S2|A|1150
9SPI|1|S2|G|1151

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27