J3_9SPI_036

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9SPI|1|S2|U|1535, 9SPI|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|S2|C|1532
9SPI|1|S2|A|1533
9SPI|1|S2|C|1534
9SPI|1|S2|U|1535
9SPI|1|S2|G|1536
*
9SPI|1|S2|C|1597
9SPI|1|S2|G|1598
9SPI|1|S2|U|1599
9SPI|1|S2|G|1600
9SPI|1|S2|A|1601
9SPI|1|S2|U|1602
9SPI|1|S2|G|1603
9SPI|1|S2|G|1604
*
9SPI|1|S2|C|1635
9SPI|1|S2|G|1636
9SPI|1|S2|A|1637
9SPI|1|S2|G|1638

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25