J3_9SRA_004
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUCG*CGAUAGCGAACUAGUA(OMC)*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9SRA|1|1|C|148, 9SRA|1|1|U|602, 9SRA|1|1|U|610
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_004 not in the Motif Atlas
- Homologous match to J3_4V9F_013
- Geometric discrepancy: 0.1865
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|C|146
9SRA|1|1|U|147
9SRA|1|1|C|148
9SRA|1|1|G|149
*
9SRA|1|1|C|599
9SRA|1|1|G|600
9SRA|1|1|A|601
9SRA|1|1|U|602
9SRA|1|1|A|603
9SRA|1|1|G|604
9SRA|1|1|C|605
9SRA|1|1|G|606
9SRA|1|1|A|607
9SRA|1|1|A|608
9SRA|1|1|C|609
9SRA|1|1|U|610
9SRA|1|1|A|611
9SRA|1|1|G|612
9SRA|1|1|U|613
9SRA|1|1|A|614
9SRA|1|1|OMC|615
*
9SRA|1|1|G|622
9SRA|1|1|G|623
9SRA|1|1|A|624
9SRA|1|1|A|625
9SRA|1|1|A|626
9SRA|1|1|G|627
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BU
- Large ribosomal subunit protein uL24
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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