J3_9SRA_016
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9SRA|1|1|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_016 not in the Motif Atlas
- Geometric match to J3_9DFE_014
- Geometric discrepancy: 0.1163
- The information below is about J3_9DFE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SRA|1|1|U|2331
9SRA|1|1|U|2332
9SRA|1|1|G|2333
*
9SRA|1|1|C|2436
9SRA|1|1|U|2437
9SRA|1|1|A|2438
9SRA|1|1|A|2439
9SRA|1|1|C|2440
*
9SRA|1|1|G|2453
9SRA|1|1|G|2454
9SRA|1|1|A|2455
9SRA|1|1|C|2456
9SRA|1|1|A|2457
9SRA|1|1|G|2458
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BM
- Large ribosomal subunit protein eL15
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