J3_9SRA_035
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAUAG*CGAUC*GGACG
- Length
- 16 nucleotides
- Bulged bases
- 9SRA|1|3|U|14, 9SRA|1|3|C|114
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_035 not in the Motif Atlas
- Homologous match to J3_4V9F_010
- Geometric discrepancy: 0.2461
- The information below is about J3_4V9F_010
- Detailed Annotation
- 5S rRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89737.1
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9SRA|1|3|C|11
9SRA|1|3|C|12
9SRA|1|3|A|13
9SRA|1|3|U|14
9SRA|1|3|A|15
9SRA|1|3|G|16
*
9SRA|1|3|C|68
9SRA|1|3|G|69
9SRA|1|3|A|70
9SRA|1|3|U|71
9SRA|1|3|C|72
*
9SRA|1|3|G|111
9SRA|1|3|G|112
9SRA|1|3|A|113
9SRA|1|3|C|114
9SRA|1|3|G|115
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
- Chain BR
- Large ribosomal subunit protein eL21
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