J3_9SRC_013
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UCGGUC*GGAAA*UA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRC_013 not in the Motif Atlas
- Homologous match to J3_4V9F_016
- Geometric discrepancy: 0.167
- The information below is about J3_4V9F_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.3
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9SRC|1|1|U|1604
9SRC|1|1|C|1605
9SRC|1|1|G|1606
9SRC|1|1|G|1607
9SRC|1|1|U|1608
9SRC|1|1|C|1609
*
9SRC|1|1|G|1643
9SRC|1|1|G|1644
9SRC|1|1|A|1645
9SRC|1|1|A|1646
9SRC|1|1|A|1647
*
9SRC|1|1|U|1664
9SRC|1|1|A|1665
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BT
- Large ribosomal subunit protein uL23
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bf
- Large ribosomal subunit protein eL39
Coloring options: