J3_9SRD_001
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CU*GUUGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 9SRD|1|1|U|26, 9SRD|1|1|A|28
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRD_001 not in the Motif Atlas
- Geometric match to J3_4V9F_019
- Geometric discrepancy: 0.2372
- The information below is about J3_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SRD|1|1|C|7
9SRD|1|1|U|8
*
9SRD|1|1|G|24
9SRD|1|1|U|25
9SRD|1|1|U|26
9SRD|1|1|G|27
9SRD|1|1|A|28
9SRD|1|1|U|29
*
9SRD|1|1|A|84
9SRD|1|1|A|85
9SRD|1|1|U|86
9SRD|1|1|C|87
9SRD|1|1|G|88
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BS
- Large ribosomal subunit protein uL22
- Chain Ba
- Large ribosomal subunit protein eL31
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