J3_9SRD_011

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)GGAGG*CUG*UAAG

Length

13 nucleotides

Bulged bases

9SRD|1|1|G|1561

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SRD_011 not in the Motif Atlas

Geometric match to J3_4V9F_006

Geometric discrepancy: 0.2462

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.3

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9SRD|1|1|4AC|1557
9SRD|1|1|G|1558
9SRD|1|1|G|1559
9SRD|1|1|A|1560
9SRD|1|1|G|1561
9SRD|1|1|G|1562
*
9SRD|1|1|C|1899
9SRD|1|1|U|1900
9SRD|1|1|G|1901
*
9SRD|1|1|U|1913
9SRD|1|1|A|1914
9SRD|1|1|A|1915
9SRD|1|1|G|1916

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain Bd

Large ribosomal subunit protein eL34