J3_9SRE_002
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GG*CUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRE_002 not in the Motif Atlas
- Geometric match to J3_9E6Q_001
- Geometric discrepancy: 0.0476
- The information below is about J3_9E6Q_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.3
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
9SRE|1|1|G|144
9SRE|1|1|G|145
*
9SRE|1|1|C|628
9SRE|1|1|U|629
9SRE|1|1|G|630
9SRE|1|1|A|631
9SRE|1|1|A|632
9SRE|1|1|A|633
9SRE|1|1|A|634
9SRE|1|1|G|635
*
9SRE|1|1|C|661
9SRE|1|1|C|662
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BS
- Large ribosomal subunit protein uL22
- Chain BU
- Large ribosomal subunit protein uL24
- Chain Bf
- Large ribosomal subunit protein eL39
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