J3_9E6Q_001

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GG*CUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9E6Q|1|1|G|23
9E6Q|1|1|G|24
*
9E6Q|1|1|C|505
9E6Q|1|1|U|506
9E6Q|1|1|G|507
9E6Q|1|1|A|508
9E6Q|1|1|A|509
9E6Q|1|1|A|510
9E6Q|1|1|A|511
9E6Q|1|1|G|512
*
9E6Q|1|1|C|538
9E6Q|1|1|C|539

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AT

Large ribosomal subunit protein uL22

Chain AV

Large ribosomal subunit protein uL24

Chain Af

Large ribosomal subunit protein eL39