J3_9SRE_007
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- (4AC)GAAG*CGCCGGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 9SRE|1|1|G|476
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRE_007 not in the Motif Atlas
- Geometric match to J3_9E6Q_006
- Geometric discrepancy: 0.1021
- The information below is about J3_9E6Q_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9SRE|1|1|4AC|451
9SRE|1|1|G|452
9SRE|1|1|A|453
9SRE|1|1|A|454
9SRE|1|1|G|455
*
9SRE|1|1|C|471
9SRE|1|1|G|472
9SRE|1|1|C|473
9SRE|1|1|C|474
9SRE|1|1|G|475
9SRE|1|1|G|476
9SRE|1|1|A|477
9SRE|1|1|G|478
9SRE|1|1|A|479
9SRE|1|1|G|480
*
9SRE|1|1|C|492
9SRE|1|1|G|493
9SRE|1|1|U|494
9SRE|1|1|A|495
9SRE|1|1|G|496
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BU
- Large ribosomal subunit protein uL24
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