J3_9SRE_011
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- (4AC)GGAGG*CUG*UAAG
- Length
- 13 nucleotides
- Bulged bases
- 9SRE|1|1|G|1561
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRE_011 not in the Motif Atlas
- Geometric match to J3_9PN5_013
- Geometric discrepancy: 0.2398
- The information below is about J3_9PN5_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.3
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SRE|1|1|4AC|1557
9SRE|1|1|G|1558
9SRE|1|1|G|1559
9SRE|1|1|A|1560
9SRE|1|1|G|1561
9SRE|1|1|G|1562
*
9SRE|1|1|C|1899
9SRE|1|1|U|1900
9SRE|1|1|G|1901
*
9SRE|1|1|U|1913
9SRE|1|1|A|1914
9SRE|1|1|A|1915
9SRE|1|1|G|1916
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain Bd
- Large ribosomal subunit protein eL34
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