J3_9SRO_011

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9SRO|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SRO_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1839

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9SRO|1|A|C|990
9SRO|1|A|U|991
9SRO|1|A|U|992
9SRO|1|A|G|993
9SRO|1|A|A|994
9SRO|1|A|C|995
9SRO|1|A|A|996
9SRO|1|A|U|997
*
9SRO|1|A|A|1044
9SRO|1|A|C|1045
9SRO|1|A|A|1046
9SRO|1|A|G|1047
*
9SRO|1|A|C|1210
9SRO|1|A|U|1211
9SRO|1|A|U|1212
9SRO|1|A|A|1213
9SRO|1|A|C|1214
9SRO|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14