J3_9SRO_013

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SRO_013 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1726

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9SRO|1|A|U|1073
9SRO|1|A|G|1074
*
9SRO|1|A|U|1083
9SRO|1|A|G|1084
9SRO|1|A|U|1085
9SRO|1|A|U|1086
*
9SRO|1|A|G|1099
9SRO|1|A|C|1100
9SRO|1|A|A|1101
9SRO|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5

Chain U

Small ribosomal subunit protein bS21