J3_9SRO_026

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SRO_026 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1081

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9SRO|1|a|G|1424
9SRO|1|a|G|1425
9SRO|1|a|G|1426
9SRO|1|a|A|1427
9SRO|1|a|C|1428
9SRO|1|a|G|1429
*
9SRO|1|a|C|1564
9SRO|1|a|C|1565
*
9SRO|1|a|G|1568
9SRO|1|a|A|1569
9SRO|1|a|A|1570
9SRO|1|a|A|1571
9SRO|1|a|A|1572
9SRO|1|a|G|1573
9SRO|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2