J3_9SS0_007

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS0_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.2289

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9SS0|1|D1|C|936
9SS0|1|D1|A|937
9SS0|1|D1|A|938
9SS0|1|D1|G|939
*
9SS0|1|D1|C|1344
9SS0|1|D1|U|1345
9SS0|1|D1|A|1346
9SS0|1|D1|G|1347
9SS0|1|D1|U|1348
9SS0|1|D1|A|1349
9SS0|1|D1|A|1350
*
9SS0|1|D1|U|1372
9SS0|1|D1|G|1373
9SS0|1|D1|A|1374
9SS0|1|D1|A|1375
9SS0|1|D1|U|1376
9SS0|1|D1|A|1377
9SS0|1|D1|C|1378
9SS0|1|D1|G|1379

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9