J3_9SS1_014

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

9SS1|1|D1|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS1_014 not in the Motif Atlas

Homologous match to J3_6CZR_025

Geometric discrepancy: 0.2645

The information below is about J3_6CZR_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

9SS1|1|D1|U|1116
9SS1|1|D1|A|1117
9SS1|1|D1|U|1118
*
9SS1|1|D1|A|1155
9SS1|1|D1|G|1156
9SS1|1|D1|A|1157
9SS1|1|D1|C|1158
9SS1|1|D1|U|1159
9SS1|1|D1|G|1160
9SS1|1|D1|C|1161
*
9SS1|1|D1|G|1175
9SS1|1|D1|A|1176
9SS1|1|D1|G|1177
9SS1|1|D1|G|1178
9SS1|1|D1|A|1179
9SS1|1|D1|A|1180
9SS1|1|D1|G|1181
9SS1|1|D1|G|1182
9SS1|1|D1|U|1183
9SS1|1|D1|G|1184

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9