J3_9SS2_005
3D structure
- PDB id
- 9SS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9SS2|1|D1|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS2_005 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2685
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9SS2|1|D1|U|672
9SS2|1|D1|A|673
*
9SS2|1|D1|U|717
9SS2|1|D1|A|718
9SS2|1|D1|C|719
9SS2|1|D1|C|720
9SS2|1|D1|G|721
9SS2|1|D1|G|722
9SS2|1|D1|U|723
9SS2|1|D1|G|724
9SS2|1|D1|G|725
*
9SS2|1|D1|C|732
9SS2|1|D1|G|733
9SS2|1|D1|G|734
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain AJ
- Small ribosomal subunit protein uS11
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AQ
- Small ribosomal subunit protein bS18
- Chain AT
- Small ribosomal subunit protein bS21
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