J3_9SS2_007

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS2_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1478

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9SS2|1|D1|C|936
9SS2|1|D1|A|937
9SS2|1|D1|A|938
9SS2|1|D1|G|939
*
9SS2|1|D1|C|1344
9SS2|1|D1|U|1345
9SS2|1|D1|A|1346
9SS2|1|D1|G|1347
9SS2|1|D1|U|1348
9SS2|1|D1|A|1349
9SS2|1|D1|A|1350
*
9SS2|1|D1|U|1372
9SS2|1|D1|G|1373
9SS2|1|D1|A|1374
9SS2|1|D1|A|1375
9SS2|1|D1|U|1376
9SS2|1|D1|A|1377
9SS2|1|D1|C|1378
9SS2|1|D1|G|1379

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9