J3_9SS2_010

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9SS2|1|D1|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS2_010 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.1733

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9SS2|1|D1|C|990
9SS2|1|D1|U|991
9SS2|1|D1|U|992
9SS2|1|D1|G|993
*
9SS2|1|D1|C|1045
9SS2|1|D1|A|1046
9SS2|1|D1|G|1047
*
9SS2|1|D1|C|1210
9SS2|1|D1|U|1211
9SS2|1|D1|U|1212
9SS2|1|D1|A|1213
9SS2|1|D1|C|1214
9SS2|1|D1|G|1215

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AM

Small ribosomal subunit protein uS14