J3_9SS2_016

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9SS2|1|D1|U|1240, 9SS2|1|D1|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS2_016 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.3057

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9SS2|1|D1|C|1237
9SS2|1|D1|A|1238
9SS2|1|D1|A|1239
9SS2|1|D1|U|1240
9SS2|1|D1|G|1241
*
9SS2|1|D1|C|1296
9SS2|1|D1|G|1297
9SS2|1|D1|U|1298
9SS2|1|D1|A|1299
9SS2|1|D1|G|1300
9SS2|1|D1|U|1301
9SS2|1|D1|C|1302
9SS2|1|D1|C|1303
*
9SS2|1|D1|G|1334
9SS2|1|D1|U|1335
9SS2|1|D1|C|1336
9SS2|1|D1|G|1337

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AL

Small ribosomal subunit protein uS13