J3_9SS4_002
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9SS4|1|D2|U|34, 9SS4|1|D2|U|448, 9SS4|1|D2|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS4_002 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3854
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9SS4|1|D2|C|32
9SS4|1|D2|C|33
9SS4|1|D2|U|34
9SS4|1|D2|G|35
*
9SS4|1|D2|C|445
9SS4|1|D2|G|446
9SS4|1|D2|A|447
9SS4|1|D2|U|448
9SS4|1|D2|A|449
9SS4|1|D2|G|450
9SS4|1|D2|U|451
9SS4|1|D2|G|452
9SS4|1|D2|A|453
9SS4|1|D2|A|454
9SS4|1|D2|C|455
9SS4|1|D2|C|456
9SS4|1|D2|A|457
9SS4|1|D2|G|458
9SS4|1|D2|U|459
9SS4|1|D2|A|460
9SS4|1|D2|C|461
*
9SS4|1|D2|G|468
9SS4|1|D2|G|469
9SS4|1|D2|A|470
9SS4|1|D2|A|471
9SS4|1|D2|A|472
9SS4|1|D2|G|473
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- Large ribosomal subunit protein bL34
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BW
- Large ribosomal subunit protein uL23
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