J3_9SS4_003
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9SS4|1|D2|U|72, 9SS4|1|D2|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS4_003 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1704
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SS4|1|D2|A|56
9SS4|1|D2|C|57
*
9SS4|1|D2|G|70
9SS4|1|D2|A|71
9SS4|1|D2|U|72
9SS4|1|D2|A|73
9SS4|1|D2|A|74
9SS4|1|D2|G|75
9SS4|1|D2|C|76
*
9SS4|1|D2|G|110
9SS4|1|D2|A|111
9SS4|1|D2|U|112
9SS4|1|D2|U|113
9SS4|1|D2|U|114
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B2
- Large ribosomal subunit protein uL29
- Chain B7
- Large ribosomal subunit protein bL34
- Chain BW
- Large ribosomal subunit protein uL23
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