J3_9SS4_013
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9SS4|1|D2|A|2388, 9SS4|1|D2|U|2390, 9SS4|1|D2|U|2423, 9SS4|1|D2|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS4_013 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1607
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9SS4|1|D2|G|2282
9SS4|1|D2|C|2283
9SS4|1|D2|A|2284
*
9SS4|1|D2|U|2384
9SS4|1|D2|C|2385
9SS4|1|D2|A|2386
9SS4|1|D2|U|2387
9SS4|1|D2|A|2388
9SS4|1|D2|G|2389
9SS4|1|D2|U|2390
9SS4|1|D2|G|2391
9SS4|1|D2|A|2392
9SS4|1|D2|U|2393
9SS4|1|D2|C|2394
9SS4|1|D2|C|2395
*
9SS4|1|D2|G|2421
9SS4|1|D2|C|2422
9SS4|1|D2|U|2423
9SS4|1|D2|C|2424
9SS4|1|D2|A|2425
9SS4|1|D2|A|2426
9SS4|1|D2|C|2427
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain B6
- Large ribosomal subunit protein bL33
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BO
- Large ribosomal subunit protein uL15
Coloring options: